Wow, thanks for the fast response!
Jerry Krinock wrote on Mar 5
th, 2015 at 11:43pm:
Were you using iCloud - Safari syncing before you started using Synkmark?
Did the Bookmarks Menu only appear after you started using Synkmark?
Are there any items in your Bookmarks Menu now, or is it empty?
To answer your questions:
1. Yes, I was using iCloud sync before I started using Synkmark.
2. Yes, the Bookmarks Menu only appeared after I started using Synkmark.
3. Yes, there are now items in the Bookmarks Menu folder. All of my folders and bookmarks except for the Favorites bar have been moved into the Bookmarks Menu.
I'll add some detail to clarify. My chrome and safari bookmarks were already almost identical before I set up Synkmark, since a few days ago I deleted all my safari bookmarks and imported them from Chrome (using file>import from...). Before and after this import, my safari folders and bookmarks appeared below Favorites in the safari sidebar, and there was no Bookmarks Menu folder.
When setting up Synkmark I chose Chrome as the preferred browser, followed by safari, followed by Firefox. I followed the steps in the dialogs and all my bookmarks appeared in the correct order and folders in Synkmark. The two top level folders were Bookmark Bar and Other Bookmarks. The bookmarks from my favs/bookmark bar were in the Bookmark Bar folder, and all other folders and bookmarks were in Other Bookmarks.
However, I noticed that empty duplicates of my folders had been created, and they were not listed as sub folders of Other Bookmarks. They were at the top level of the hierarchy, and they were associated with Safari. I synced anyway.
In safari, I ended up with the new Bookmark Menu folder that I described above, which contained all the correct sub folders and bookmarks. There were also empty duplicate folders in the top level. In chrome I ended up with empty duplicates in the Other Bookmarks folder. And in Firefox the empty duplicates were added to Unfiled Bookmarks.
I deleted the empty duplicates from chrome, waited a while and they were removed from safari and Firefox.
Basically, it just seems like Synkmark wants there to be a top level Bookmark Menu folder in Safari (to be equivalent to Other Bookmarks and Bookmarks Menu in Firefox), but I think it was removed in the latest version of Safari (at least from the UI - i don't know what's going on behind the scenes!).
I hope that makes sense. It's really a pretty minor problem, as everything is syncing perfectly, it's just all in the Bookmark Menu folder now in safari.